Package: signatureSurvival 1.0.0
signatureSurvival: Signature Survival Analysis
When multiple Cox proportional hazard models are performed on clinical data (month or year and status) and a set of differential expressions of genes, the results (Hazard risks, z-scores and p-values) can be used to create gene-expression signatures. Weights are calculated using the survival p-values of genes and are utilized to calculate expression values of the signature across the selected genes in all patients in a cohort. A Single or multiple univariate or multivariate Cox proportional hazard survival analyses of the patients in one cohort can be performed by using the gene-expression signature and visualized using our survival plots.
Authors:
signatureSurvival_1.0.0.tar.gz
signatureSurvival_1.0.0.zip(r-4.5)signatureSurvival_1.0.0.zip(r-4.4)signatureSurvival_1.0.0.zip(r-4.3)
signatureSurvival_1.0.0.tgz(r-4.4-any)signatureSurvival_1.0.0.tgz(r-4.3-any)
signatureSurvival_1.0.0.tar.gz(r-4.5-noble)signatureSurvival_1.0.0.tar.gz(r-4.4-noble)
signatureSurvival_1.0.0.tgz(r-4.4-emscripten)signatureSurvival_1.0.0.tgz(r-4.3-emscripten)
signatureSurvival.pdf |signatureSurvival.html✨
signatureSurvival/json (API)
| # Install 'signatureSurvival' in R: |
| install.packages('signatureSurvival', repos = c('https://yuande.r-universe.dev', 'https://cloud.r-project.org')) |
- GSE50081 - Survival data from cohort GSE50081
- TCGA_forestplt - Data for forestplot
- TCGA_survivalData - TCGA data for survival analysis
- TS_signature - A signature constructed with a set of tumor suppressor genes
- results - Results of univariate Cox proportional hazard analysis of patients with ADC in three cohorts.
- signature_weight - Weights of genes in a signature
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:9fa077f4f7. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 11 2024 |
| R-4.5-win | NOTE | Nov 11 2024 |
| R-4.5-linux | NOTE | Nov 11 2024 |
| R-4.4-win | OK | Nov 11 2024 |
| R-4.4-mac | OK | Nov 11 2024 |
| R-4.3-win | OK | Nov 11 2024 |
| R-4.3-mac | OK | Nov 11 2024 |
Exports:MKMplotMMKMplotMUKMplotmusvtestMVKMresultmvstestsignatureExpSKMCresultsurvivalForestUKMplotweight
Dependencies:abindbackportsbitopsbootbroomcarcarDatacaToolscheckmateclicolorspacecommonmarkcorrplotcowplotcpp11curldata.tableDerivdoBydplyrevaluateexactRankTestsfansifarverforestplotFormulagenericsggplot2ggpubrggrepelggsciggsignifggtextgluegplotsgridExtragridtextgtablegtoolshighrisobandjpegKernSmoothkm.ciKMsurvknitrlabelinglatticelifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmaxstatmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolynompurrrquantregR6RColorBrewerRcppRcppEigenrlangrstatixscalesSparseMstringistringrsurvivalsurvminersurvMisctibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtableyamlzoo
